Open source projects for proteomics supported by Tokyo Metropolitan Institute of Gerontology
Mass repository for workgroup -- Private mass repository for proteome research work group
We started developing our original repository system for mass spectrometry (MS) data in 2012 as an open source software system. The repository system has been developed as a PostgreSQL-PHP-Apache system for supporting web interfaces. The Micromassrepo
(current version: 0.95 This software is licensed under GNU Lesser General Public License.
LIPAGE -- Laboratory information management system for 2DPAGE-based proteomics workflow
Most research scientists working in the field of proteomics are confronted with difficulties in management of large volumes of data. Therefore, a well-developed open source laboratory information management system (LIMS) should be available for their proteomics research studies. The LIPAGE
(current version: 0.92) is a laboratory information management system for 2DPAGE-based proteomics. This is Apache-PHP-PostgreSQL system. Working on alomost any Linux. The project is managed by staffs of the bioinformatics group in Tokyo metropolitan Intitute of gerontology. The LIPAGE is licensed
under GNU Lesser General Public License.
Hiraku Morisawa, Mikako Hirota and Tosifusa Toda: Development of an open source laboratory information management system for 2-D gel electrophoresis-based proteomics workflow BMC Bioinformatics 2006, 7:430 (04 Oct 2006)
LIMS Client for 2-D Gel Proteomics
Beta version (0.61) is released. This version supported data conversion for the XML files exported from the PDQuest system [Bio-Rad laboratories Inc].
Client of LIPAGE (current version: 0.61) is a client software application of our LIMS. It is a data conversion software for the XML files exported from the PDQuest system by Bio-Rad laboratories Inc. It supports to upload 2DPAGE information to LIPAGE. We create a new software application from scratch. Working on only Microsoft Windows 2000 and XP.